Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs62073553 chr17:76503560 C/A 4.21E-6 118 42.25 38.33 25.83 KM Plot
THYM rs62075874 chr17:76512477 A/C 6.19E-6 114 38.13 38.58 25.83 KM Plot
THYM rs62101376 chr18:33582955 T/C 0.000228 118 49.4 35 51.23 KM Plot
THYM rs62101379 chr18:33584902 G/A 0.000228 118 49.4 35 51.23 KM Plot
THYM rs62132780 chr19:49239274 G/A 2.36E-6 114 11.58 53.27 38.13 KM Plot
THYM rs62226688 chr21:45520711 A/G 0.000107 119 38.58 50.65 28.43 KM Plot
THYM rs62226731 chr21:45583098 C/G 0.000116 118 38.58 51.23 28.43 KM Plot
THYM rs62226732 chr21:45583209 G/A 0.000127 116 38.58 51.53 28.43 KM Plot
THYM rs62228167 chr21:45594315 C/T 2.89E-14 114 37.73 50.65 16.28 KM Plot
THYM rs62248062 chr3:71809960 A/G 0.000308 117 45.03 42.25 27.83 KM Plot
THYM rs62459255 chr7:45317564 A/T 2.6E-5 118 50.07 35 14.9 KM Plot
THYM rs62508713 chr8:50147735 A/T 2.69E-10 118 46.27 50.82 25.83 KM Plot
THYM rs62508984 chr8:50077099 A/G 2.76E-10 118 46.43 50.1 25.83 KM Plot
THYM rs62510361 chr8:50221118 A/T 1.71E-10 119 46.43 49.75 25.83 KM Plot
THYM rs62521797 chr8:124134321 A/T 6.28E-6 116 38.83 57.93 25.83 KM Plot